STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50583.1DNA repair protein RecN. (563 aa)    
Predicted Functional Partners:
AEI50586.1
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase.
 
    0.849
AEI49566.1
Protein recA.
  
  
 0.743
AEI50585.1
Hypothetical protein.
 
     0.687
AEI50582.1
Viral A-type inclusion protein.
       0.678
AEI50267.1
Peptidase S24/S26A/S26B, conserved region.
   
  
 0.634
AEI51616.1
Peptidase S24/S26A/S26B, conserved region.
   
  
 0.634
AEI50856.1
Transcription-repair coupling factor.
 
   
 0.619
AEI50581.1
Electron transport protein SCO1/SenC.
       0.610
AEI50584.1
Hypothetical protein.
       0.604
AEI48635.1
Inorganic polyphosphate/ATP-NAD kinase.
   
 0.598
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.