STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50585.1Hypothetical protein. (309 aa)    
Predicted Functional Partners:
AEI50586.1
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase.
      0.876
AEI50587.1
Hypothetical protein.
 
     0.786
AEI48951.1
Hypothetical protein.
  
     0.774
AEI51183.1
TPR repeat-containing protein.
 
     0.772
AEI47899.1
Hypothetical protein.
  
     0.769
AEI50584.1
Hypothetical protein.
       0.764
AEI48772.1
Outer membrane chaperone Skp (OmpH).
  
     0.759
AEI51855.1
Hypothetical protein.
  
     0.747
AEI50588.1
Outer membrane assembly lipoprotein YfiO.
 
     0.733
AEI48148.1
PorT-related protein.
  
     0.721
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.