STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50590.1Hypothetical protein. (653 aa)    
Predicted Functional Partners:
AEI50588.1
Outer membrane assembly lipoprotein YfiO.
 
  
 0.818
AEI50432.1
Surface antigen (D15).
  
  
 0.795
AEI50587.1
Hypothetical protein.
 
     0.765
AEI47923.1
Tetratricopeptide TPR_2 repeat-containing protein.
 
   
 0.753
AEI51897.1
Hypothetical protein.
 
    0.752
AEI50891.1
Hypothetical protein.
  
   
 0.748
AEI48777.1
4'-phosphopantetheinyl transferase.
  
     0.742
AEI49459.1
Hypothetical protein.
 
     0.739
AEI48203.1
Hypothetical protein.
  
   
 0.725
AEI51121.1
PpiC-type peptidyl-prolyl cis-trans isomerase.
 
  
 0.720
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.