STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50607.1Putative transcriptional regulator. (454 aa)    
Predicted Functional Partners:
Runsl_4287
Putative transcriptional regulator.
  
  
 
0.929
AEI48912.1
ATP-dependent DNA helicase RecG.
     
 0.901
AEI50605.1
Conserved hypothetical protein CHP02653, peptidase S16 non-peptidase.
 
     0.814
AEI50606.1
Conserved hypothetical protein CHP02687.
 
     0.799
AEI50608.1
HipA domain protein.
       0.776
AEI50609.1
HipA N-terminal domain protein.
       0.776
AEI50610.1
Transcriptional regulator, y4mF family.
       0.774
AEI47931.1
Putative transcriptional regulator.
  
     0.641
AEI50611.1
Hypothetical protein.
 
     0.594
AEI50612.1
Hypothetical protein.
 
     0.461
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.