STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50611.1Hypothetical protein. (1119 aa)    
Predicted Functional Partners:
AEI50605.1
Conserved hypothetical protein CHP02653, peptidase S16 non-peptidase.
 
  
 0.989
AEI50612.1
Hypothetical protein.
 
    0.988
AEI50613.1
Domain of unknown function DUF1788.
 
  
 0.959
AEI50606.1
Conserved hypothetical protein CHP02687.
 
     0.907
AEI50614.1
Protein of unknown function DUF1819 putative inner membrane.
 
     0.899
AEI48956.1
Protein of unknown function DUF814.
  
    0.801
AEI50249.1
Type I restriction-modification system, M subunit.
  
  
 0.791
AEI49709.1
Transcription elongation factor GreA/GreB domain-containing protein.
  
    0.763
AEI49304.1
SMC domain protein.
 
    0.738
AEI47175.1
Superfamily I DNA and RNA helicase and helicase subunits-like protein.
  
    0.715
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.