STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50612.1Hypothetical protein. (1173 aa)    
Predicted Functional Partners:
AEI50613.1
Domain of unknown function DUF1788.
 
   0.997
AEI50611.1
Hypothetical protein.
 
    0.988
AEI50605.1
Conserved hypothetical protein CHP02653, peptidase S16 non-peptidase.
 
    0.985
AEI50614.1
Protein of unknown function DUF1819 putative inner membrane.
 
     0.955
AEI50606.1
Conserved hypothetical protein CHP02687.
 
    0.873
AEI47592.1
Ribosomal protein L13.
   
  0.843
AEI48114.1
Ribosomal protein L24.
    
  0.840
AEI48123.1
Ribosomal protein L25/L23.
    
  0.840
AEI48122.1
Ribosomal protein L2.
    
  0.839
AEI48110.1
Ribosomal protein L6.
    
  0.838
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.