Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50619.1Hypothetical protein. (1094 aa)    
Predicted Functional Partners:
AEI50622.1
Helicase domain-containing protein.
 
     0.784
AEI51338.1
Conserved repeat domain protein.
  
     0.701
AEI46479.1
Hypothetical protein.
  
     0.591
AEI47180.1
PilT protein domain protein.
  
     0.590
AEI50618.1
Hypothetical protein.
 
     0.563
AEI51419.1
Conserved repeat domain protein.
  
     0.509
AEI50575.1
Hypothetical protein.
  
     0.493
AEI50617.1
Hypothetical protein.
       0.485
AEI49788.1
Glycosyl transferase family 25.
  
     0.468
AEI46895.1
Response regulator receiver and SARP domain protein.
  
     0.457
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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