STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50640.1tRNA(Ile)-lysidine synthase. (439 aa)    
Predicted Functional Partners:
AEI48225.1
Hypoxanthine phosphoribosyltransferase.
 
  
 0.931
AEI48412.1
CMP/dCMP deaminase zinc-binding protein.
 
  
 0.775
AEI46687.1
Peptidyl-tRNA hydrolase.
 
  
 0.738
AEI50856.1
Transcription-repair coupling factor.
 
    0.696
AEI51119.1
tRNA pseudouridine synthase A.
  
  
 0.622
AEI50117.1
Universal protein YeaZ.
 
   
 0.617
AEI48152.1
GTP-binding protein engA.
 
  
 0.594
AEI50641.1
Xylose isomerase domain-containing protein TIM barrel.
       0.532
AEI51212.1
tRNA modification GTPase mnmE.
 
   
 0.518
AEI48480.1
Phenylalanyl-tRNA synthetase beta chain.
 
  
 0.517
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.