STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50642.1Cytochrome c class I. (1248 aa)    
Predicted Functional Partners:
AEI48805.1
TatD-related deoxyribonuclease.
 
     0.696
AEI48801.1
Type I phosphodiesterase/nucleotide pyrophosphatase.
 
     0.675
AEI48802.1
Hypothetical protein.
 
     0.661
Runsl_0537
Quinoprotein glucose dehydrogenase.
 
     0.656
AEI48804.1
UbiA prenyltransferase.
 
    0.650
AEI48806.1
Hypothetical protein.
  
     0.634
AEI50641.1
Xylose isomerase domain-containing protein TIM barrel.
       0.592
AEI46663.1
Glucose/sorbosone dehydrogenase.
  
     0.567
AEI50643.1
NUDIX hydrolase.
       0.560
AEI51811.1
Protein of unknown function DUF1080.
 
     0.554
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.