STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50657.1TraR/DksA family transcriptional regulator. (127 aa)    
Predicted Functional Partners:
AEI48244.1
DNA-directed RNA polymerase subunit beta.
  
 
 0.857
AEI48245.1
DNA-directed RNA polymerase subunit beta'.
  
 
 
 0.857
AEI50587.1
Hypothetical protein.
 
 
 
 0.820
AEI48098.1
DNA-directed RNA polymerase subunit alpha.
  
 
 0.750
AEI51601.1
Hypothetical protein.
  
     0.703
AEI46566.1
Cobalamin synthesis protein P47K.
  
  
 0.698
AEI48264.1
Cobalamin synthesis protein P47K.
  
  
 0.698
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
 
     0.686
AEI47923.1
Tetratricopeptide TPR_2 repeat-containing protein.
 
     0.639
AEI48135.1
Hypothetical protein.
  
     0.634
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.