STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50687.1NUDIX hydrolase. (223 aa)    
Predicted Functional Partners:
Runsl_3241
tRNA-Met.
    
 0.907
AEI46593.1
Starch synthase.
   
 
  0.904
AEI48575.1
Mannose-1-phosphate guanylyltransferase.
    
  0.902
AEI46985.1
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I.
  
 
  0.901
Runsl_1103
Phosphoglucosamine mutase.
  
 
  0.901
AEI48750.1
NUDIX hydrolase.
     
  0.900
AEI49421.1
UTP-glucose-1-phosphate uridylyltransferase.
    
  0.900
AEI50873.1
HAD-superfamily hydrolase, subfamily IA, variant 3.
  
 
 0.832
AEI50442.1
YjeF-related protein.
  
 0.736
AEI51795.1
Protein of unknown function DUF303 acetylesterase.
  
     0.695
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.