STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50690.1TonB-dependent receptor plug. (820 aa)    
Predicted Functional Partners:
AEI50966.1
TonB-dependent receptor plug.
 
    0.647
AEI51696.1
Hypothetical protein.
  
     0.562
AEI48744.1
Hypothetical protein.
 
    0.534
AEI50713.1
Sulfate transporter/antisigma-factor antagonist STAS.
 
     0.525
AEI50891.1
Hypothetical protein.
  
    0.517
AEI49766.1
O-antigen polymerase.
  
     0.514
AEI50479.1
Hypothetical protein.
 
     0.511
AEI49780.1
Glycosyl transferase family 2.
 
     0.498
AEI46829.1
TonB family protein.
 
 
 0.471
AEI50689.1
Peptidase T.
       0.457
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.