STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50699.1Protein of unknown function DUF2126. (1141 aa)    
Predicted Functional Partners:
AEI50698.1
Protein of unknown function DUF404.
  
 0.959
AEI47799.1
Transglutaminase domain-containing protein.
 
     0.753
AEI50697.1
Transglutaminase domain-containing protein.
 
    
0.751
AEI50688.1
Hypothetical protein.
  
     0.736
AEI46674.1
Protein of unknown function DUF404.
    0.710
AEI51342.1
Protein of unknown function DUF403.
 
  
 0.637
AEI49462.1
Hypothetical protein.
  
 
  0.522
AEI49534.1
5'-Nucleotidase domain-containing protein.
    
  0.500
AEI50201.1
5'-nucleotidase.
     
  0.500
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.