STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50704.1Xylose isomerase domain-containing protein TIM barrel. (311 aa)    
Predicted Functional Partners:
AEI48958.1
Oxidoreductase domain protein.
   
 
  0.917
AEI50227.1
Oxidoreductase domain protein.
   
 
  0.917
AEI50415.1
Oxidoreductase domain protein.
   
 
  0.917
AEI51274.1
Oxidoreductase domain protein.
   
 
  0.917
AEI47090.1
Xylose isomerase domain-containing protein TIM barrel.
     
  0.900
AEI46472.1
Membrane-bound dehydrogenase domain protein.
  
     0.644
AEI49653.1
Oxidoreductase domain protein.
  
    0.603
AEI48678.1
TonB-dependent receptor.
  
     0.537
AEI47750.1
Oxidoreductase domain protein.
  
    0.530
AEI46478.1
Poly(3-hydroxybutyrate) depolymerase-like protein.
  
     0.513
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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