STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50709.1Malate dehydrogenase (acceptor). (371 aa)    
Predicted Functional Partners:
AEI51123.1
Malic protein NAD-binding protein.
    
 0.936
AEI51653.1
Phosphoenolpyruvate carboxykinase (ATP).
    
 0.919
AEI49293.1
Fumarate hydratase class II.
    
 0.918
AEI51866.1
Citrate synthase I.
    
 0.917
AEI48049.1
Malate dehydrogenase.
    
 0.916
AEI48189.1
Phosphoenolpyruvate carboxylase.
     
 0.915
AEI50717.1
Glutamate synthase (ferredoxin).
    
 0.861
AEI51845.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
  
  0.834
AEI48301.1
Argininosuccinate lyase.
    
 0.816
AEI48128.1
Formyltetrahydrofolate deformylase.
    
  0.815
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.