STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50710.1Tetratricopeptide TPR_2 repeat-containing protein. (707 aa)    
Predicted Functional Partners:
AEI50711.1
Tetratricopeptide TPR_1 repeat-containing protein.
   
 
 0.617
AEI49180.1
Transcriptional regulator, AraC family.
 
 
 0.555
AEI50709.1
Malate dehydrogenase (acceptor).
       0.500
AEI49491.1
Multi-sensor hybrid histidine kinase.
  
  
 0.486
AEI50712.1
Phosphoribosylaminoimidazole-succinocarboxamide synthase.
       0.472
AEI46853.1
Tetratricopeptide TPR_2 repeat-containing protein.
 
 
 
 0.465
AEI47989.1
Glycosyl transferase family 2.
 
  
 0.463
AEI51233.1
Hypothetical protein.
  
     0.406
AEI48486.1
DNA polymerase I.
  
    0.404
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.