STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50726.1Ribulose-phosphate 3-epimerase. (218 aa)    
Predicted Functional Partners:
AEI50014.1
Transketolase.
  
 0.995
AEI50324.1
Transketolase.
  
 0.995
AEI50018.1
Transketolase.
 
 
 0.949
AEI51172.1
Sugar-phosphate isomerase, RpiB/LacA/LacB family.
 
 
 0.946
AEI47520.1
Xylulokinase.
 
  
 0.938
AEI50321.1
Transketolase central region.
 
 
 0.936
AEI49751.1
L-ribulose-5-phosphate 4-epimerase.
  
 
 0.922
AEI50810.1
6-phosphogluconate dehydrogenase, decarboxylating.
    
 0.913
AEI49748.1
L-ribulokinase.
   
 0.904
AEI49929.1
Ribosome biogenesis GTPase RsgA.
 
  
 0.851
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.