STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50736.1(Dimethylallyl)adenosine tRNA methylthiotransferase miaB. (485 aa)    
Predicted Functional Partners:
AEI48273.1
Ribosomal RNA large subunit methyltransferase N.
 
  
 0.736
AEI50027.1
ATPase-like, ParA/MinD.
  
   
 0.691
AEI48024.1
Oxygen-independent coproporphyrinogen III oxidase.
 
  
 0.673
AEI50738.1
Hypothetical protein.
  
    0.613
AEI50968.1
Polyribonucleotide nucleotidyltransferase.
 
  
 0.553
AEI51103.1
tRNA dimethylallyltransferase.
 
  
 0.553
AEI50737.1
Sigma54 specific transcriptional regulator, Fis family.
       0.530
AEI47905.1
Delta-1-pyrroline-5-carboxylate dehydrogenase.
    
 0.493
AEI50926.1
Ribonuclease, Rne/Rng family.
 
  
 0.480
AEI50739.1
Hypothetical protein.
       0.474
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.