STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50737.1Sigma54 specific transcriptional regulator, Fis family. (445 aa)    
Predicted Functional Partners:
AEI50738.1
Hypothetical protein.
       0.819
AEI47788.1
RNA polymerase, sigma 54 subunit, RpoN.
 
  
 0.788
AEI51878.1
RNA polymerase, sigma 54 subunit, RpoN.
 
  
 0.788
AEI50739.1
Hypothetical protein.
       0.607
AEI49491.1
Multi-sensor hybrid histidine kinase.
  
 
 0.561
AEI49000.1
Signal transduction histidine kinase with CheB and CheR activity.
  
 
 0.557
AEI50736.1
(Dimethylallyl)adenosine tRNA methylthiotransferase miaB.
       0.530
AEI51397.1
Multi-sensor hybrid histidine kinase.
  
 
 0.530
AEI47784.1
Signal transduction histidine kinase, nitrogen specific, NtrB.
 
 
 0.518
AEI49652.1
Multi-sensor hybrid histidine kinase.
  
 
 0.471
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.