STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50738.1Hypothetical protein. (182 aa)    
Predicted Functional Partners:
AEI51034.1
DNA topoisomerase I.
  
    0.811
AEI50737.1
Sigma54 specific transcriptional regulator, Fis family.
       0.796
AEI50432.1
Surface antigen (D15).
 
     0.770
AEI47923.1
Tetratricopeptide TPR_2 repeat-containing protein.
  
     0.762
AEI51601.1
Hypothetical protein.
  
     0.762
AEI50587.1
Hypothetical protein.
  
     0.755
AEI50588.1
Outer membrane assembly lipoprotein YfiO.
  
     0.748
AEI49089.1
Protein of unknown function DUF177.
  
     0.746
AEI51169.1
Hypothetical protein.
  
     0.737
AEI51610.1
WbqC-like family protein.
  
     0.737
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.