STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50776.1Hypothetical protein. (71 aa)    
Predicted Functional Partners:
AEI48108.1
Ribosomal protein S5.
    
 0.953
AEI50969.1
Ribosomal protein S15.
   
  0.878
AEI48836.1
Ribosomal protein S12.
   
  0.875
AEI48116.1
30S ribosomal protein S17.
   
  0.856
AEI48099.1
Ribosomal protein S4.
   
  0.839
AEI48111.1
Ribosomal protein S8.
   
  0.836
AEI48884.1
Squalene/phytoene synthase.
    
 0.835
AEI48100.1
30S ribosomal protein S11.
   
  0.834
AEI48776.1
WD40 repeat-containing protein.
  
 0.794
AEI50895.1
tRNA (guanine-N(7)-)-methyltransferase.
   
 0.794
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.