STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50794.1Catalase. (313 aa)    
Predicted Functional Partners:
AEI49082.1
Protein of unknown function DUF892.
    0.978
AEI50795.1
DsbA oxidoreductase.
 
     0.720
AEI50793.1
Hypothetical protein.
       0.553
AEI49003.1
Alcohol dehydrogenase GroES domain protein.
 
    0.549
AEI51816.1
Beta-lactamase-like protein.
  
     0.494
AEI50791.1
L-sorbosone dehydrogenase.
       0.473
AEI50792.1
SMP-30/Gluconolaconase/LRE-like region-containing protein.
       0.473
AEI48946.1
FAD dependent oxidoreductase.
 
     0.472
AEI50129.1
Protein of unknown function DUF421.
 
   
 0.449
AEI47314.1
Hypothetical protein.
  
   
 0.448
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.