STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50797.1Hypothetical protein. (375 aa)    
Predicted Functional Partners:
AEI51229.1
RagB/SusD domain-containing protein.
  
 
 0.847
AEI50890.1
Tetratricopeptide TPR_1 repeat-containing protein.
  
 0.778
AEI50588.1
Outer membrane assembly lipoprotein YfiO.
  
 0.723
AEI49455.1
Chaperone protein dnaJ.
    
 0.678
AEI51167.1
Anti-sigma H sporulation factor, LonB.
  
 
 0.673
AEI48434.1
Cell surface receptor IPT/TIG domain protein.
  
 0.627
AEI50119.1
Pyrrolo-quinoline quinone repeat-containing protein.
  
 0.627
AEI47624.1
Hypothetical protein.
  
 0.606
AEI49370.1
Hypothetical protein.
  
 0.582
AEI51718.1
Membrane-associated zinc metalloprotease.
  
  
 0.571
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.