STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50819.1Amidohydrolase 2. (372 aa)    
Predicted Functional Partners:
AEI50818.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
       0.707
AEI51279.1
Hypothetical protein.
  
     0.608
AEI50817.1
Peptidase M16 domain protein.
       0.506
AEI48967.1
Hypothetical protein.
  
     0.494
AEI49475.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
    0.478
AEI46862.1
Protein of unknown function DUF1080.
 
     0.456
AEI50820.1
2-dehydro-3-deoxyphosphooctonate aldolase.
       0.456
AEI50767.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
    0.452
AEI48764.1
Transcriptional regulator PadR family protein.
  
     0.443
AEI50240.1
Dienelactone hydrolase-like protein.
  
     0.419
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.