STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50820.12-dehydro-3-deoxyphosphooctonate aldolase. (283 aa)    
Predicted Functional Partners:
AEI48132.1
Low specificity phosphatase (HAD superfamily)-like protein.
 
  
 0.955
AEI48736.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family.
   
 0.947
AEI50042.1
3-deoxy-manno-octulosonate cytidylyltransferase.
 
   
 0.843
AEI50330.1
Tetraacyldisaccharide 4'-kinase.
 
   
 0.840
AEI49281.1
Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein.
 
   
 0.836
AEI49832.1
lipid-A-disaccharide synthase.
 
   
 0.835
AEI47276.1
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase.
 
  
 0.833
AEI47278.1
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase.
 
   
 0.805
AEI47277.1
(3R)-hydroxymyristoyl-(acyl-carrier- protein)dehydratase.
 
  
 0.780
AEI51612.1
Lipid A biosynthesis acyltransferase.
 
  
 0.711
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.