STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50821.1Transcriptional regulator, AraC family. (295 aa)    
Predicted Functional Partners:
AEI50822.1
Hypothetical protein.
 
     0.696
AEI51466.1
Transcriptional regulator, AraC family.
 
   0.550
AEI49700.1
Transcriptional regulator, AraC family.
 
   0.538
AEI46640.1
NAD-dependent deacetylase.
 
    0.519
AEI51061.1
Transcriptional regulator, AraC family.
 
   0.501
AEI49991.1
Transcriptional regulator with cupin sensor, AraC family.
 
   0.496
AEI51875.1
Transcriptional regulator, AraC family.
 
   0.489
AEI48551.1
Transcriptional regulator, GntR family.
  
  
 0.476
AEI50494.1
Transcriptional regulator, GntR family with UTRA sensor domain.
  
  
 0.476
AEI49014.1
Transcriptional regulator with cupin sensor, AraC family.
  
   0.464
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.