STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50839.1Serine O-acetyltransferase. (275 aa)    
Predicted Functional Partners:
AEI47281.1
Cysteine synthase B.
 
 0.996
AEI48285.1
cysteinyl-tRNA synthetase.
 
  
 0.988
AEI47032.1
L-serine dehydratase 1.
     
 0.915
AEI50574.1
Serine dehydratase alpha chain.
     
 0.915
AEI46858.1
Aspartate kinase.
    
 0.879
AEI47917.1
Glycine hydroxymethyltransferase.
     
 0.847
AEI49423.1
Homoserine kinase.
     
 0.831
AEI47193.1
Threonine dehydratase.
    
 0.830
AEI50080.1
Quinolinate synthase A.
  
    0.814
AEI50974.1
Tryptophan synthase alpha chain.
     
 0.813
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.