STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50848.13-dehydroquinate synthase. (342 aa)    
Predicted Functional Partners:
AEI51709.1
Shikimate kinase.
  
 0.996
AEI49058.1
3-phosphoshikimate 1-carboxyvinyltransferase.
  
 0.982
AEI47861.1
Chorismate synthase.
  
 0.977
AEI51915.1
3-dehydroquinate dehydratase.
 
 0.975
AEI48353.1
3-deoxy-7-phosphoheptulonate synthase.
 
  
 0.945
AEI48621.1
Shikimate dehydrogenase substrate binding domain protein.
  
 0.936
AEI48803.1
3-dehydroquinate synthase.
  
  
 
0.925
AEI49525.1
Ppx/GppA phosphatase.
 
 
    0.795
AEI50901.1
DNA gyrase, A subunit.
 
  
 0.759
AEI48929.1
Glutamine amidotransferase of anthranilate synthase.
 
  
 0.703
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.