STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50854.1Hypothetical protein. (155 aa)    
Predicted Functional Partners:
AEI51533.1
Glycoside hydrolase family 42 domain protein.
  
     0.594
AEI47153.1
Surface antigen (D15).
  
     0.555
AEI50855.1
Hypothetical protein.
       0.520
AEI47154.1
Protein of unknown function DUF490.
  
     0.494
AEI51772.1
Hypothetical protein.
  
     0.477
AEI51317.1
Putative transcriptional regulator, Crp/Fnr family.
  
     0.468
AEI46885.1
Phosphate-selective porin O and P.
  
     0.458
AEI50226.1
Ig family protein.
  
     0.433
AEI49472.1
Hypothetical protein.
  
     0.422
AEI51532.1
Glycoside hydrolase family 42 domain protein.
  
     0.417
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.