STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50856.1Transcription-repair coupling factor. (1120 aa)    
Predicted Functional Partners:
AEI48245.1
DNA-directed RNA polymerase subunit beta'.
  
 
 
 0.939
AEI48244.1
DNA-directed RNA polymerase subunit beta.
  
 
 
 0.927
AEI48098.1
DNA-directed RNA polymerase subunit alpha.
 
 
 
 0.906
AEI50587.1
Hypothetical protein.
    
 
 0.861
AEI47504.1
Excinuclease ABC, A subunit.
 
 
 
 0.835
AEI47697.1
Excinuclease ABC, A subunit.
   
 
 0.813
AEI47860.1
DNA polymerase III, beta subunit.
 
   
 0.775
AEI51813.1
UDP-N-acetylglucosamine1- carboxyvinyltransferase.
 
   
 0.758
AEI46687.1
Peptidyl-tRNA hydrolase.
  
  
 0.726
AEI47739.1
Cell division protein FtsK/SpoIIIE.
 
   
 0.722
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.