STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50859.1Hypothetical protein. (263 aa)    
Predicted Functional Partners:
AEI46740.1
Membrane-bound dehydrogenase domain protein.
  
     0.753
AEI46739.1
Lipolytic protein G-D-S-L family.
  
     0.747
AEI47227.1
Endonuclease/exonuclease/phosphatase.
 
      0.679
AEI50860.1
Hypothetical protein.
 
     0.629
AEI48321.1
Hypothetical protein.
  
     0.602
AEI50554.1
Hypothetical protein.
  
     0.528
AEI48654.1
6-phosphogluconolactonase.
 
      0.522
AEI50858.1
Lipoprotein.
       0.501
AEI51833.1
Protein of unknown function DUF1549.
  
     0.500
AEI47090.1
Xylose isomerase domain-containing protein TIM barrel.
 
     0.447
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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