STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50871.1LL-diaminopimelate aminotransferase. (384 aa)    
Predicted Functional Partners:
AEI51705.1
Diaminopimelate epimerase.
 
 0.942
AEI51898.1
Dihydrodipicolinate reductase.
 
  
 0.932
AEI50897.1
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase.
  
 
 0.916
AEI49544.1
Prephenate dehydrogenase.
 
  
 0.716
AEI50872.1
Peptidase M50.
  
  
 0.568
AEI46858.1
Aspartate kinase.
  
 
 0.533
AEI50717.1
Glutamate synthase (ferredoxin).
  
  
 0.496
AEI50873.1
HAD-superfamily hydrolase, subfamily IA, variant 3.
  
    0.491
AEI50870.1
Enolase.
  
  
 0.469
AEI51845.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.458
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.