STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50875.1RNA-metabolising metallo-beta-lactamase. (480 aa)    
Predicted Functional Partners:
AEI50867.1
2,3-bisphosphoglycerate-independent phosphoglycerate mutase.
  
 0.874
AEI48776.1
WD40 repeat-containing protein.
    
 0.841
AEI51302.1
RNP-1 like RNA-binding protein.
   
 0.840
AEI50874.1
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha.
       0.773
AEI48486.1
DNA polymerase I.
  
 0.617
AEI50939.1
Naringenin-chalcone synthase.
    
 0.566
AEI50873.1
HAD-superfamily hydrolase, subfamily IA, variant 3.
       0.565
AEI48244.1
DNA-directed RNA polymerase subunit beta.
    
  0.522
AEI50872.1
Peptidase M50.
       0.487
AEI46509.1
PHP domain protein.
  
 
 0.464
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.