STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50879.1Galactokinase. (391 aa)    
Predicted Functional Partners:
AEI51343.1
Aldose 1-epimerase.
 0.991
AEI50937.1
GHMP kinase.
  
  
  0.973
AEI48779.1
UDP-glucose 4-epimerase.
 
 
 0.916
AEI48520.1
Beta-galactosidase.
 
  
 0.639
AEI49041.1
Beta-glucuronidase.
 
  
 0.633
AEI50880.1
Glycerol-3-phosphate dehydrogenase.
     
 0.602
AEI51755.1
Aldose 1-epimerase.
 
 
 0.593
AEI47565.1
Hypothetical protein.
 
  
  0.592
AEI48043.1
ATP synthase subunit beta.
    
   0.527
AEI47088.1
Hypothetical protein.
  
 
 0.525
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.