STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI50890.1Tetratricopeptide TPR_1 repeat-containing protein. (1005 aa)    
Predicted Functional Partners:
AEI48434.1
Cell surface receptor IPT/TIG domain protein.
  
 0.926
AEI50119.1
Pyrrolo-quinoline quinone repeat-containing protein.
  
 0.926
AEI50432.1
Surface antigen (D15).
 
 0.921
AEI50891.1
Hypothetical protein.
 
   
 0.921
AEI51229.1
RagB/SusD domain-containing protein.
   
 0.918
AEI48068.1
OmpA/MotB domain protein.
 
  
 0.913
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
 
 0.869
AEI46657.1
OmpA/MotB domain protein.
 
  
 0.866
AEI50893.1
Hypothetical protein.
 
  
 0.840
AEI48771.1
Outer membrane chaperone Skp (OmpH).
 
  
 0.818
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.