STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50897.12,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. (270 aa)    
Predicted Functional Partners:
AEI51898.1
Dihydrodipicolinate reductase.
 
 
 0.969
AEI48800.1
Acetylornithine transaminase.
    
 0.917
AEI50871.1
LL-diaminopimelate aminotransferase.
  
 
 0.916
AEI47030.1
GMP synthase (glutamine-hydrolyzing).
  
  
 0.794
AEI49467.1
Dihydrodipicolinate synthase.
 
  
 0.621
AEI46858.1
Aspartate kinase.
 
  
 0.604
AEI49213.1
Aspartate-semialdehyde dehydrogenase.
 
  
 0.586
AEI48480.1
Phenylalanyl-tRNA synthetase beta chain.
   
  
 0.561
AEI51705.1
Diaminopimelate epimerase.
 
  
 0.527
Runsl_2546
Hypothetical protein.
  
     0.495
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.