STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50903.1Protein of unknown function DUF349. (625 aa)    
Predicted Functional Partners:
AEI48014.1
Hypothetical protein.
  
     0.773
AEI50432.1
Surface antigen (D15).
  
 
   0.773
AEI50863.1
Hypothetical protein.
  
     0.766
AEI46661.1
Hypothetical protein.
  
     0.762
AEI51037.1
Hypothetical protein.
  
     0.762
AEI49631.1
Tetratricopeptide domain protein.
  
     0.757
AEI47514.1
Hypothetical protein.
  
     0.754
AEI47339.1
Hypothetical protein.
  
    0.746
AEI49089.1
Protein of unknown function DUF177.
  
     0.746
AEI48234.1
Hypothetical protein.
  
     0.738
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.