STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50917.1DNA topoisomerase (ATP-hydrolyzing). (908 aa)    
Predicted Functional Partners:
AEI48006.1
DNA topoisomerase type IIA subunit B region 2 domain protein.
 
 
 0.992
AEI51261.1
DNA gyrase, B subunit.
 
 
 0.985
AEI48490.1
Protein-export membrane protein SecD.
 
  
 0.801
AEI50916.1
Protein of unknown function DUF218.
       0.795
AEI48597.1
Arginyl-tRNA synthetase.
 
  
 0.727
AEI46692.1
Methionyl-tRNA synthetase.
  
  
 0.683
AEI49393.1
NusA antitermination factor.
 
  
 0.682
AEI50901.1
DNA gyrase, A subunit.
  
  
0.656
AEI50918.1
Coproporphyrinogen oxidase.
       0.642
AEI50657.1
TraR/DksA family transcriptional regulator.
 
  
 0.619
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.