STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50919.1Methyltransferase small. (270 aa)    
Predicted Functional Partners:
AEI50920.1
Ribonuclease H-related protein.
 
     0.819
AEI50918.1
Coproporphyrinogen oxidase.
       0.678
AEI50916.1
Protein of unknown function DUF218.
       0.552
AEI50917.1
DNA topoisomerase (ATP-hydrolyzing).
       0.552
AEI50921.1
Hypothetical protein.
       0.536
AEI51824.1
Ribosomal RNA small subunit methyltransferase I.
 
  
 0.503
AEI50070.1
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
  
 0.424
AEI48569.1
Fmu (Sun) domain protein.
 
     0.418
AEI48184.1
Asparaginyl-tRNA synthetase.
 
     0.410
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.