STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50924.1S-adenosylmethionine:tRNAribosyltransferase-isom erase. (423 aa)    
Predicted Functional Partners:
AEI47214.1
Queuine tRNA-ribosyltransferase.
 
 0.982
AEI50925.1
Hypothetical protein.
       0.754
AEI51325.1
Iron-sulfur cluster binding protein.
 
   
 0.573
AEI47248.1
Hypothetical protein.
  
    0.509
AEI50926.1
Ribonuclease, Rne/Rng family.
       0.507
AEI48490.1
Protein-export membrane protein SecD.
     
 0.476
AEI51126.1
Undecaprenyl-diphosphatase.
 
     0.474
AEI48486.1
DNA polymerase I.
     
 0.439
AEI51125.1
tRNA pseudouridine synthase B.
  
  
 0.437
AEI47292.1
Holliday junction ATP-dependent DNA helicase ruvB.
  
  
 0.424
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.