STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI50970.1Permease YjgP/YjgQ family protein. (501 aa)    
Predicted Functional Partners:
AEI50208.1
Sulfate-transporting ATPase.
 
 
 0.979
AEI48555.1
Permease YjgP/YjgQ family protein.
 
 
  0.954
AEI46519.1
Methionyl-tRNA formyltransferase.
 
    0.908
AEI50971.1
Hypothetical protein.
 
     0.839
AEI51486.1
ABC transporter related protein.
     
  0.800
AEI49459.1
Hypothetical protein.
 
  
 0.746
AEI47277.1
(3R)-hydroxymyristoyl-(acyl-carrier- protein)dehydratase.
 
  
 0.740
AEI48195.1
Hypothetical protein.
 
     0.731
AEI50632.1
Protein of unknown function DUF164.
  
     0.720
AEI51601.1
Hypothetical protein.
  
     0.707
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.