STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51000.1Lipid A 3-O-deacylase-related protein. (377 aa)    
Predicted Functional Partners:
AEI48759.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.645
AEI48058.1
Outer membrane efflux protein.
  
     0.632
AEI49124.1
TetR family transcriptional regulator.
  
   
 0.604
AEI49830.1
Hypothetical protein.
  
     0.600
AEI49849.1
Hypothetical protein.
 
  
 0.580
AEI50999.1
Hypothetical protein.
 
     0.563
AEI48785.1
Response regulator receiver protein.
  
     0.550
AEI51120.1
PpiC-type peptidyl-prolyl cis-trans isomerase.
 
  
 0.532
AEI47046.1
Hypothetical protein.
  
  
 0.517
AEI48465.1
Hypothetical protein.
  
  
 0.517
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.