STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51007.1Oxidoreductase domain protein. (338 aa)    
Predicted Functional Partners:
AEI51008.1
Protein of unknown function DUF1972.
  
    0.773
AEI51006.1
Hypothetical protein.
       0.764
AEI51009.1
Glycosyl transferase group 1.
  
    0.737
AEI51010.1
Glycosyl transferase family 2.
       0.737
AEI51011.1
Glycosyl transferase group 1.
  
    0.707
AEI51055.1
Oxidoreductase domain protein.
  
     0.662
AEI51005.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
       0.637
AEI51004.1
dTDP-glucose 4,6-dehydratase.
       0.542
AEI50977.1
Oxidoreductase domain protein.
  
     0.525
AEI51003.1
Glucose-1-phosphate thymidylyltransferase.
  
    0.411
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.