STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51036.1TonB-dependent receptor plug. (892 aa)    
Predicted Functional Partners:
AEI51037.1
Hypothetical protein.
 
  
  0.603
AEI50542.1
Membrane protein involved in aromatic hydrocarbon degradation.
  
     0.591
AEI48295.1
Cytochrome c class I.
  
     0.568
AEI50588.1
Outer membrane assembly lipoprotein YfiO.
  
     0.494
AEI51311.1
Smr protein/MutS2.
  
     0.482
AEI47113.1
Hypothetical protein.
  
     0.448
AEI49068.1
Cytochrome c class I.
  
     0.439
AEI49277.1
TonB family protein.
  
   0.427
AEI49927.1
TonB-dependent receptor plug.
  
  
  0.426
AEI48224.1
Hypothetical protein.
  
     0.425
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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