STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51072.1Ribokinase. (313 aa)    
Predicted Functional Partners:
AEI46825.1
Deoxyribose-phosphate aldolase.
   
 0.978
AEI51099.1
Ribose-phosphate pyrophosphokinase.
   
 0.916
AEI51172.1
Sugar-phosphate isomerase, RpiB/LacA/LacB family.
    
 0.910
AEI51071.1
ADP-ribosylation/Crystallin J1.
 
   
 0.908
AEI48579.1
Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase.
    
 0.905
AEI46985.1
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I.
    
 0.904
AEI50014.1
Transketolase.
    
 0.902
AEI50018.1
Transketolase.
    
  0.902
AEI50321.1
Transketolase central region.
    
  0.902
AEI50324.1
Transketolase.
    
 0.902
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.