STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51083.1Glycoside hydrolase family 39. (486 aa)    
Predicted Functional Partners:
AEI51091.1
Dimethylmenaquinone methyltransferase.
 
     0.835
AEI51089.1
SSS sodium solute transporter superfamily.
 
     0.810
AEI51082.1
RagB/SusD domain-containing protein.
 
     0.807
AEI51090.1
Short-chain dehydrogenase/reductase SDR.
 
    0.783
AEI51081.1
TonB-dependent receptor plug.
 
     0.776
AEI51084.1
Glycosyl hydrolase family 88.
       0.773
AEI51087.1
Protein of unknown function DUF1565.
 
     0.757
AEI51077.1
Transcriptional regulator, IclR family.
  
     0.706
AEI51062.1
Glycosyl hydrolase 38 domain protein.
 
  
 0.684
AEI47579.1
Hypothetical protein.
  
     0.658
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.