STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51097.1tryptophanyl-tRNA synthetase. (325 aa)    
Predicted Functional Partners:
AEI50071.1
Alpha/beta hydrolase fold protein.
 
      0.869
AEI48599.1
glutamyl-tRNA synthetase.
 
 
 0.722
AEI51098.1
Phosphoesterase PA-phosphatase related protein.
       0.671
AEI48480.1
Phenylalanyl-tRNA synthetase beta chain.
  
  
 0.646
AEI48486.1
DNA polymerase I.
 
   
 0.588
AEI51096.1
Conserved hypothetical protein CHP02453.
       0.569
AEI47487.1
seryl-tRNA synthetase.
  
 
 0.554
AEI48172.1
Peptide chain release factor 1.
 
 
 0.554
AEI46692.1
Methionyl-tRNA synthetase.
  
 
 0.544
AEI47030.1
GMP synthase (glutamine-hydrolyzing).
  
  
 0.541
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.