STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51103.1tRNA dimethylallyltransferase. (307 aa)    
Predicted Functional Partners:
AEI51850.1
tRNA dimethylallyltransferase.
  
  
 
0.925
AEI51104.1
Hypothetical protein.
       0.809
AEI51102.1
Beta-lactamase.
       0.737
AEI47471.1
GTP-binding proten HflX.
  
  
 0.605
AEI48480.1
Phenylalanyl-tRNA synthetase beta chain.
 
  
 0.572
AEI50736.1
(Dimethylallyl)adenosine tRNA methylthiotransferase miaB.
 
  
 0.553
AEI51101.1
Thioredoxin.
  
    0.540
AEI51105.1
3-oxoacyl-(acyl-carrier-protein) reductase.
       0.536
AEI51106.1
N-acylmannosamine kinase.
       0.536
AEI47244.1
Holliday junction resolvase.
  
    0.516
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.