STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51119.1tRNA pseudouridine synthase A. (249 aa)    
Predicted Functional Partners:
AEI48098.1
DNA-directed RNA polymerase subunit alpha.
  
  
 0.856
AEI49809.1
Ribosomal RNA small subunit methyltransferase H.
  
 
 0.815
AEI48097.1
50S ribosomal protein L17.
  
  
 0.813
AEI50034.1
Rhodanese-like protein.
   
 
 0.806
AEI48941.1
UBA/THIF-type NAD/FAD binding protein.
  
 
 0.796
AEI51125.1
tRNA pseudouridine synthase B.
  
 
 0.722
AEI48199.1
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta.
    
 0.669
AEI48245.1
DNA-directed RNA polymerase subunit beta'.
  
  
 0.668
AEI50640.1
tRNA(Ile)-lysidine synthase.
  
  
 0.622
AEI50856.1
Transcription-repair coupling factor.
  
    0.621
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.