STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51124.1Riboflavin biosynthesis protein RibF. (311 aa)    
Predicted Functional Partners:
AEI51125.1
tRNA pseudouridine synthase B.
  
 0.987
AEI48310.1
Riboflavin synthase, alpha subunit.
    
 0.929
AEI47329.1
HAD-superfamily hydrolase, subfamily IA, variant 3.
  
 
 0.912
AEI47457.1
Glycosyl transferase family 2.
      0.863
AEI49373.1
Cytidylate kinase.
  
 0.855
AEI50136.1
Phosphopantetheine adenylyltransferase.
 
   
 0.794
AEI51126.1
Undecaprenyl-diphosphatase.
       0.738
AEI47463.1
Guanylate kinase.
 
  
 0.717
AEI48987.1
tRNA-specific 2-thiouridylase mnmA.
 
  
 0.709
AEI49529.1
Iojap-like protein.
 
    0.663
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.